In [0]:
import tensorflow as tf
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import keras
import numpy as np
import pandas as pd
from keras.preprocessing import image
from tqdm import tqdm
Using TensorFlow backend.
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import matplotlib.pyplot as plt
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from PIL import Image
import numpy as np
import os
import cv2
import keras
from keras.utils import np_utils
from keras.models import Sequential
from keras.layers import Conv2D,MaxPooling2D,Dense,Flatten,Dropout
In [11]:
from google.colab import files
files.upload()#choose your person kaggle.json downloaded from kaggle
Saving kaggle.json to kaggle.json
Out[11]:
{'kaggle.json': b'{"username":"ajcool19","key":"b7eae67f2b769435be7d9713cc27a55f"}'}
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!pip install -q kaggle
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!mkdir -p ~/.kaggle
!cp kaggle.json ~/.kaggle/
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!kaggle datasets list
Warning: Your Kaggle API key is readable by other users on this system! To fix this, you can run 'chmod 600 /root/.kaggle/kaggle.json' ref title size lastUpdated downloadCount ----------------------------------------------------------- -------------------------------------------------- ----- ------------------- ------------- ronitf/heart-disease-uci Heart Disease UCI 3KB 2018-06-25 11:33:56 27754 karangadiya/fifa19 FIFA 19 complete player dataset 2MB 2018-12-21 03:52:59 21706 iarunava/cell-images-for-detecting-malaria Malaria Cell Images Dataset 337MB 2018-12-05 05:40:21 4374 bigquery/crypto-ethereum-classic Ethereum Classic Blockchain 70GB 2019-03-20 23:21:25 0 jutrera/stanford-car-dataset-by-classes-folder Stanford Car Dataset by classes folder 2GB 2018-07-02 07:35:45 2768 vjchoudhary7/customer-segmentation-tutorial-in-python Mall Customer Segmentation Data 2KB 2018-08-11 07:23:02 6839 russellyates88/suicide-rates-overview-1985-to-2016 Suicide Rates Overview 1985 to 2016 396KB 2018-12-01 19:18:25 20310 rmisra/news-headlines-dataset-for-sarcasm-detection News Headlines Dataset For Sarcasm Detection 2MB 2018-06-09 22:14:56 2552 lava18/google-play-store-apps Google Play Store Apps 2MB 2019-02-03 13:55:47 48799 mohansacharya/graduate-admissions Graduate Admissions 9KB 2018-12-28 10:07:14 18332 jessicali9530/stanford-dogs-dataset Stanford Dogs Dataset 735MB 2019-02-13 05:45:25 2479 anokas/kuzushiji Kuzushiji-MNIST 318MB 2018-12-17 01:19:31 797 cityofLA/los-angeles-parking-citations Los Angeles Parking Citations 257MB 2019-04-13 22:17:45 3032 noriuk/us-education-datasets-unification-project U.S. Education Datasets: Unification Project 85MB 2019-03-02 18:41:52 3307 safegraph/visit-patterns-by-census-block-group Consumer & Visitor Insights For Neighborhoods 66MB 2018-12-19 21:31:50 1303 safegraph/census-block-group-american-community-survey-data Census Block Group American Community Survey Data 2GB 2018-12-22 00:29:56 707 jessicali9530/celeba-dataset CelebFaces Attributes (CelebA) Dataset 1GB 2018-06-01 20:08:48 6411 pavansanagapati/urban-sound-classification Urban Sound Classification 6GB 2018-06-16 13:44:36 2269 fivethirtyeight/fivethirtyeight-comic-characters-dataset FiveThirtyEight Comic Characters Dataset 577KB 2019-03-26 15:01:15 2295 xvivancos/barcelona-data-sets Barcelona data sets 1MB 2018-12-13 14:16:53 3669
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!kaggle datasets download -d iarunava/cell-images-for-detecting-malaria
Warning: Your Kaggle API key is readable by other users on this system! To fix this, you can run 'chmod 600 /root/.kaggle/kaggle.json' Downloading cell-images-for-detecting-malaria.zip to /content 98% 329M/337M [00:04<00:00, 72.7MB/s] 100% 337M/337M [00:04<00:00, 79.0MB/s]
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!ls
cell-images-for-detecting-malaria.zip kaggle.json sample_data
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from zipfile import ZipFile
data= ZipFile('cell-images-for-detecting-malaria.zip')
fields= ['Parasitized','Uninfected']
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data.extractall()
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data.printdir()
File Name Modified Size cell_images/ 2018-03-28 09:09:12 0 cell_images/Parasitized/ 2018-03-28 08:36:34 0 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144104_cell_162.png 2016-07-13 12:39:20 14025 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144104_cell_163.png 2016-07-13 12:39:20 18152 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144104_cell_164.png 2016-07-13 12:39:20 12825 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144104_cell_165.png 2016-07-13 12:39:20 13627 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144104_cell_166.png 2016-07-13 12:39:20 11236 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144104_cell_167.png 2016-07-13 12:39:20 14725 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144104_cell_168.png 2016-07-13 12:39:20 11218 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144104_cell_169.png 2016-07-13 12:39:20 11231 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144104_cell_170.png 2016-07-13 12:39:20 10739 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144104_cell_171.png 2016-07-13 12:39:20 13416 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144348_cell_138.png 2016-07-13 12:40:08 15141 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144348_cell_139.png 2016-07-13 12:40:08 13852 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144348_cell_140.png 2016-07-13 12:40:08 11773 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144348_cell_141.png 2016-07-13 12:40:08 12309 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144348_cell_142.png 2016-07-13 12:40:08 11625 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144348_cell_143.png 2016-07-13 12:40:08 9930 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144348_cell_144.png 2016-07-13 12:40:08 12519 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144823_cell_157.png 2016-07-13 12:40:58 12290 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144823_cell_158.png 2016-07-13 12:40:58 13853 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144823_cell_159.png 2016-07-13 12:40:58 12532 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144823_cell_160.png 2016-07-13 12:40:58 11278 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144823_cell_161.png 2016-07-13 12:40:58 13152 cell_images/Parasitized/C100P61ThinF_IMG_20150918_144823_cell_162.png 2016-07-13 12:40:58 6922 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145042_cell_162.png 2016-07-13 12:41:48 12443 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145042_cell_163.png 2016-07-13 12:41:48 12062 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145042_cell_164.png 2016-07-13 12:41:48 11531 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145042_cell_165.png 2016-07-13 12:41:48 5895 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145042_cell_166.png 2016-07-13 12:41:48 12977 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145042_cell_167.png 2016-07-13 12:41:48 11235 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145422_cell_163.png 2016-07-13 12:42:38 8913 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145422_cell_164.png 2016-07-13 12:42:38 15350 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145422_cell_165.png 2016-07-13 12:42:38 9531 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145422_cell_166.png 2016-07-13 12:42:38 12123 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145422_cell_167.png 2016-07-13 12:42:38 9845 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145422_cell_168.png 2016-07-13 12:42:38 10649 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145422_cell_169.png 2016-07-13 12:42:38 12973 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145609_cell_144.png 2016-07-13 12:43:28 10868 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145609_cell_145.png 2016-07-13 12:43:28 9576 cell_images/Parasitized/C100P61ThinF_IMG_20150918_145609_cell_146.png 2016-07-13 12:43:28 14734 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cell_images/Uninfected/C98P59ThinF_IMG_20150917_154235_cell_85.png 2016-07-13 16:16:14 9623 cell_images/Uninfected/C98P59ThinF_IMG_20150917_154235_cell_86.png 2016-07-13 16:16:14 8094 cell_images/Uninfected/C98P59ThinF_IMG_20150917_154452_cell_102.png 2016-07-13 16:17:12 8822 cell_images/Uninfected/C98P59ThinF_IMG_20150917_154452_cell_108.png 2016-07-13 16:17:12 10253 cell_images/Uninfected/C98P59ThinF_IMG_20150917_154452_cell_111.png 2016-07-13 16:17:12 4380 cell_images/Uninfected/C98P59ThinF_IMG_20150917_154452_cell_144.png 2016-07-13 16:17:12 9755 cell_images/Uninfected/C98P59ThinF_IMG_20150917_154452_cell_19.png 2016-07-13 16:17:10 7293 cell_images/Uninfected/C98P59ThinF_IMG_20150917_154452_cell_199.png 2016-07-13 16:17:14 10683 cell_images/Uninfected/C98P59ThinF_IMG_20150917_154452_cell_33.png 2016-07-13 16:17:10 10553 cell_images/Uninfected/C98P59ThinF_IMG_20150917_154452_cell_44.png 2016-07-13 16:17:10 10478 cell_images/Uninfected/C98P59ThinF_IMG_20150917_154452_cell_70.png 2016-07-13 16:17:12 8543 cell_images/Uninfected/C98P59ThinF_IMG_20150917_154452_cell_99.png 2016-07-13 16:17:12 7381 cell_images/Uninfected/C99P60ThinF_IMG_20150918_140900_cell_24.png 2016-07-13 12:31:10 14484 cell_images/Uninfected/C99P60ThinF_IMG_20150918_140900_cell_34.png 2016-07-13 12:31:10 8729 cell_images/Uninfected/C99P60ThinF_IMG_20150918_140900_cell_41.png 2016-07-13 12:31:10 13563 cell_images/Uninfected/C99P60ThinF_IMG_20150918_140900_cell_44.png 2016-07-13 12:31:10 5305 cell_images/Uninfected/C99P60ThinF_IMG_20150918_140900_cell_52.png 2016-07-13 12:31:10 10559 cell_images/Uninfected/C99P60ThinF_IMG_20150918_140900_cell_59.png 2016-07-13 12:31:10 15191 cell_images/Uninfected/C99P60ThinF_IMG_20150918_140900_cell_6.png 2016-07-13 12:31:08 10671 cell_images/Uninfected/C99P60ThinF_IMG_20150918_140900_cell_66.png 2016-07-13 12:31:10 14134 cell_images/Uninfected/C99P60ThinF_IMG_20150918_140900_cell_69.png 2016-07-13 12:31:10 11679 cell_images/Uninfected/C99P60ThinF_IMG_20150918_140900_cell_91.png 2016-07-13 12:31:10 10789 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141001_cell_24.png 2016-07-13 12:31:58 11374 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141001_cell_26.png 2016-07-13 12:31:58 15187 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141001_cell_4.png 2016-07-13 12:31:58 14086 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141001_cell_46.png 2016-07-13 12:32:00 16114 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141001_cell_50.png 2016-07-13 12:32:00 10163 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141001_cell_60.png 2016-07-13 12:32:00 11522 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141001_cell_61.png 2016-07-13 12:32:00 17278 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141001_cell_66.png 2016-07-13 12:32:00 13876 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141001_cell_69.png 2016-07-13 12:32:00 15002 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141001_cell_89.png 2016-07-13 12:32:00 10254 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141129_cell_15.png 2016-07-13 12:32:48 8981 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141129_cell_20.png 2016-07-13 12:32:48 15778 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141129_cell_21.png 2016-07-13 12:32:48 12052 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141129_cell_3.png 2016-07-13 12:32:48 12679 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141129_cell_38.png 2016-07-13 12:32:48 13321 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141129_cell_75.png 2016-07-13 12:32:48 10064 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141129_cell_77.png 2016-07-13 12:32:48 11021 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141129_cell_8.png 2016-07-13 12:32:48 10901 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141129_cell_84.png 2016-07-13 12:32:48 12639 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141129_cell_86.png 2016-07-13 12:32:50 11401 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141314_cell_11.png 2016-07-13 12:33:36 13896 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141314_cell_16.png 2016-07-13 12:33:36 15009 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141314_cell_31.png 2016-07-13 12:33:38 13185 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141314_cell_39.png 2016-07-13 12:33:38 9314 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141314_cell_46.png 2016-07-13 12:33:38 9178 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141314_cell_57.png 2016-07-13 12:33:38 6575 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141314_cell_65.png 2016-07-13 12:33:38 11975 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141314_cell_77.png 2016-07-13 12:33:38 12661 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141314_cell_79.png 2016-07-13 12:33:38 8535 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141314_cell_81.png 2016-07-13 12:33:38 9858 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141351_cell_22.png 2016-07-13 12:34:24 5266 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141351_cell_26.png 2016-07-13 12:34:24 13259 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141351_cell_53.png 2016-07-13 12:34:26 12189 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141351_cell_56.png 2016-07-13 12:34:26 13380 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141351_cell_75.png 2016-07-13 12:34:26 12896 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141351_cell_83.png 2016-07-13 12:34:26 5658 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141351_cell_92.png 2016-07-13 12:34:26 10661 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141520_cell_1.png 2016-07-13 12:35:12 14104 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141520_cell_16.png 2016-07-13 12:35:14 11440 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141520_cell_17.png 2016-07-13 12:35:14 8909 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141520_cell_22.png 2016-07-13 12:35:14 13331 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141520_cell_31.png 2016-07-13 12:35:16 12183 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141520_cell_38.png 2016-07-13 12:35:16 14023 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141520_cell_42.png 2016-07-13 12:35:16 10098 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141520_cell_45.png 2016-07-13 12:35:16 13804 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141520_cell_64.png 2016-07-13 12:35:16 13015 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141520_cell_73.png 2016-07-13 12:35:16 15354 cell_images/Uninfected/C99P60ThinF_IMG_20150918_141520_cell_9.png 2016-07-13 12:35:12 12878 cell_images/Uninfected/C99P60ThinF_IMG_20150918_142128_cell_11.png 2016-07-13 12:37:40 13993 cell_images/Uninfected/C99P60ThinF_IMG_20150918_142128_cell_14.png 2016-07-13 12:37:40 11593 cell_images/Uninfected/C99P60ThinF_IMG_20150918_142128_cell_15.png 2016-07-13 12:37:40 10395 cell_images/Uninfected/C99P60ThinF_IMG_20150918_142128_cell_3.png 2016-07-13 12:37:40 12726 cell_images/Uninfected/C99P60ThinF_IMG_20150918_142128_cell_45.png 2016-07-13 12:37:40 13072 cell_images/Uninfected/C99P60ThinF_IMG_20150918_142128_cell_47.png 2016-07-13 12:37:40 11111 cell_images/Uninfected/C99P60ThinF_IMG_20150918_142128_cell_52.png 2016-07-13 12:37:40 9953 cell_images/Uninfected/C99P60ThinF_IMG_20150918_142128_cell_53.png 2016-07-13 12:37:40 12324 cell_images/Uninfected/C99P60ThinF_IMG_20150918_142128_cell_55.png 2016-07-13 12:37:40 14690 cell_images/Uninfected/C99P60ThinF_IMG_20150918_142128_cell_56.png 2016-07-13 12:37:40 16193 cell_images/Uninfected/Thumbs.db 2018-03-23 11:04:22 9539584
In [8]:
import os
print(os.listdir('cell_images/Parasitized/'))
print(os.listdir('cell_images/Uninfected/'))
['C120P81ThinF_IMG_20151002_130918_cell_197.png', 'C184P145ThinF_IMG_20151203_104153_cell_138.png', 'C175P136NThinF_IMG_20151127_142326_cell_240.png', 'C129P90ThinF_IMG_20151004_134944_cell_3.png', 'C59P20thinF_IMG_20150803_113139_cell_33.png', 'C47P8thin_Original_Motic_IMG_20150714_093636_cell_188.png', 'C182P143NThinF_IMG_20151201_172216_cell_182.png', 'C60P21thinF_IMG_20150804_113011_cell_7.png', 'C48P9thinF_IMG_20150721_160944_cell_218.png', 'C59P20thinF_IMG_20150803_112858_cell_171.png', 'C108P69ThinF_IMG_20150924_225004_cell_224.png', 'C102P63ThinF_IMG_20150918_163054_cell_169.png', 'C189P150ThinF_IMG_20151203_141004_cell_73.png', 'C72P33_ThinF_IMG_20150815_104045_cell_208.png', 'C132P93ThinF_IMG_20151004_152505_cell_113.png', 'C99P60ThinF_IMG_20150918_141351_cell_96.png', 'C181P142ThinF_IMG_20151127_160434_cell_156.png', 'C186P147NThinF_IMG_20151203_150859_cell_163.png', 'C128P89ThinF_IMG_20151004_131231_cell_140.png', 'C149P110ThinF_IMG_20151115_115154_cell_254.png', 'C46P7ThinF_IMG_20151130_205828_cell_145.png', 'C70P31_ThinF_IMG_20150813_130849_cell_77.png', 'C91P52ThinF_IMG_20150821_124937_cell_191.png', 'C118P79ThinF_IMG_20151002_110942_cell_19.png', 'C84P45ThinF_IMG_20150818_101146_cell_90.png', 'C91P52ThinF_IMG_20150821_124937_cell_224.png', 'C87P48ThinF_IMG_20150820_132642_cell_174.png', 'C89P50ThinF_IMG_20150820_162153_cell_195.png', 'C37BP2_thinF_IMG_20150620_132847a_cell_77.png', 'C132P93ThinF_IMG_20151004_152257_cell_145.png', 'C68P29N_ThinF_IMG_20150819_134625_cell_64.png', 'C48P9thinF_IMG_20150721_160944_cell_204.png', 'C68P29N_ThinF_IMG_20150819_134712_cell_38.png', 'C157P118ThinF_IMG_20151115_164755_cell_192.png', 'C140P101ThinF_IMG_20151005_210309_cell_183.png', 'C97P58ThinF_IMG_20150917_150838_cell_152.png', 'C97P58ThinF_IMG_20150917_151437_cell_175.png', 'C33P1thinF_IMG_20150619_121102a_cell_193.png', 'C157P118ThinF_IMG_20151115_163915_cell_173.png', 'C39P4thinF_original_IMG_20150622_105803_cell_89.png', 'C68P29N_ThinF_IMG_20150819_133350_cell_123.png', 'C48P9thinF_IMG_20150721_161412_cell_178.png', 'C99P60ThinF_IMG_20150918_141620_cell_6.png', 'C81P42ThinF_IMG_20150817_120712_cell_159.png', 'C167P128ReThinF_IMG_20151201_105559_cell_225.png', 'C129P90ThinF_IMG_20151004_134520_cell_110.png', 'C132P93ThinF_IMG_20151004_152642_cell_47.png', 'C182P143NThinF_IMG_20151201_172842_cell_23.png', 'C179P140ThinF_IMG_20151127_153350_cell_175.png', 'C130P91ThinF_IMG_20151004_142709_cell_120.png', 'C137P98ThinF_IMG_20151005_160918_cell_78.png', 'C182P143NThinF_IMG_20151201_171950_cell_185.png', 'C181P142ThinF_IMG_20151127_160434_cell_176.png', 'C79P40ThinF_IMG_20150817_102702_cell_184.png', 'C132P93ThinF_IMG_20151004_152808_cell_9.png', 'C99P60ThinF_IMG_20150918_142334_cell_15.png', 'C189P150ThinF_IMG_20151203_140902_cell_121.png', 'C48P9thinF_IMG_20150721_160944_cell_237.png', 'C119P80ThinF_IMG_20151002_123043_cell_164.png', 'C70P31_ThinF_IMG_20150813_131924_cell_8.png', 'C167P128ReThinF_IMG_20151201_105707_cell_229.png', 'C143P104ThinF_IMG_20151005_230100_cell_160.png', 'C137P98ThinF_IMG_20151005_155704_cell_53.png', 'C159P120ThinF_IMG_20151115_190812_cell_241.png', 'C113P74ThinF_IMG_20150930_134751_cell_177.png', 'C132P93ThinF_IMG_20151004_152353_cell_151.png', 'C118P79ThinF_IMG_20151002_105346_cell_166.png', 'C99P60ThinF_IMG_20150918_141129_cell_114.png', 'C103P64ThinF_IMG_20150918_164553_cell_173.png', 'C175P136NThinF_IMG_20151127_142009_cell_237.png', 'C154P115ThinF_IMG_20151115_141407_cell_223.png', 'C119P80ThinF_IMG_20151002_124425_cell_137.png', 'C176P137NThinF_IMG_20151201_120845_cell_139.png', 'C110P71ThinF_IMG_20150930_105319_cell_188.png', 'C186P147NThinF_IMG_20151203_150322_cell_166.png', 'C184P145ThinF_IMG_20151203_103824_cell_123.png', 'C118P79ThinF_IMG_20151002_105125_cell_162.png', 'C116P77ThinF_IMG_20150930_171954_cell_114.png', 'C84P45ThinF_IMG_20150818_101226_cell_98.png', 'C105P66ThinF_IMG_20150924_095716_cell_113.png', 'C80P41ThinF_IMG_20150817_111802_cell_9.png', 'C82P43ThinF_IMG_20150817_123500_cell_245.png', 'C99P60ThinF_IMG_20150918_142128_cell_95.png', 'C117P78ThinF_IMG_20150930_214941_cell_80.png', 'C136P97ThinF_IMG_20151005_144449_cell_28.png', 'C184P145ThinF_IMG_20151203_104153_cell_153.png', 'C84P45ThinF_IMG_20150818_101257_cell_94.png', 'C182P143NThinF_IMG_20151201_172842_cell_5.png', 'C180P141NThinF_IMG_20151201_165601_cell_195.png', 'C45P6ThinF_IMG_20151130_160135_cell_218.png', 'C59P20thinF_IMG_20150803_113051_cell_168.png', 'C97P58ThinF_IMG_20150917_151512_cell_169.png', 'C80P41ThinF_IMG_20150817_110834_cell_122.png', 'C184P145ThinF_IMG_20151203_104334_cell_27.png', 'C148P109ThinF_IMG_20151115_112445_cell_241.png', 'C93P54ThinF_IMG_20150821_164024_cell_200.png', 'C180P141NThinF_IMG_20151201_163702_cell_198.png', 'C179P140ThinF_IMG_20151127_153453_cell_178.png', 'C116P77ThinF_IMG_20150930_171809_cell_81.png', 'C80P41ThinF_IMG_20150817_111802_cell_20.png', 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In [0]:
import cv2
import numpy as np
from matplotlib import pyplot as plt
from google.colab.patches import cv2_imshow
In [13]:
data=[]#assigning labels and images to lists data and labels for further proccesing.
labels=[]
parasitized_path =os.listdir("cell_images/Parasitized/")
for pars in parasitized_path:
try:
image=cv2.imread("cell_images/Parasitized/"+ pars)
image_from_array = Image.fromarray(image, 'RGB')
size_image = image_from_array.resize((224, 224))
data.append(np.array(size_image))
labels.append(0)
except Exception as e:
print(e)
'NoneType' object has no attribute '__array_interface__'
In [14]:
uninfected_path=os.listdir('cell_images/Uninfected/')
for unef in uninfected_path:
try:
image=cv2.imread("cell_images/Uninfected/" + unef)
image_from_array = Image.fromarray(image, 'RGB')
size_image = image_from_array.resize((224, 224))
data.append(np.array(size_image))
labels.append(1)
except Exception as e:
print(e)
'NoneType' object has no attribute '__array_interface__'
In [15]:
print('Lenght of Data : ' + str(len(data)))
print('Lenght of Data : ' + str(len(labels)))
Lenght of Data : 27558 Lenght of Data : 27558
In [16]:
Cells = np.array(data)
labels = np.array(labels)
np.save('Cells' , Cells)
np.save('labels' , labels)
print('Cells : {} | labels : {}'.format(Cells.shape , labels.shape))
Cells : (27558, 224, 224, 3) | labels : (27558,)
In [0]:
Cells=np.load("Cells.npy")
labels=np.load("labels.npy")
In [0]:
num_classes=len(np.unique(labels))
len_data=len(Cells)
In [0]:
(x_train,x_test)=Cells[(int)(0.1*len_data):],Cells[:(int)(0.1*len_data)]
x_train = x_train.astype('float32')/255
x_test = x_test.astype('float32')/255
train_len=len(x_train)
test_len=len(x_test)
(y_train,y_test)=labels[(int)(0.1*len_data):],labels[:(int)(0.1*len_data)]
y_train=keras.utils.to_categorical(y_train,num_classes) #one hot encoding
y_test=keras.utils.to_categorical(y_test,num_classes)
In [0]:
model=Sequential()
model.add(Conv2D(filters=16,kernel_size=2,padding="same",activation="relu",input_shape=(224,224,3)))
model.add(MaxPooling2D(pool_size=2))
model.add(Conv2D(filters=32,kernel_size=2,padding="same",activation="relu"))
model.add(MaxPooling2D(pool_size=2))
model.add(Conv2D(filters=64,kernel_size=2,padding="same",activation="relu"))
model.add(MaxPooling2D(pool_size=2))
model.add(Dropout(0.2))
model.add(Conv2D(filters=128,kernel_size=2,padding="same",activation="relu"))
model.add(MaxPooling2D(pool_size=2))
model.add(Dropout(0.2))
model.add(Conv2D(filters=256,kernel_size=2,padding="same",activation="relu"))
model.add(MaxPooling2D(pool_size=2))
model.add(Dropout(0.2))
model.add(Conv2D(filters=512,kernel_size=2,padding="same",activation="relu"))
model.add(MaxPooling2D(pool_size=2))
model.add(Dropout(0.2))
model.add(Flatten())
model.add(Dense(500,activation="relu"))
model.add(Dropout(0.2))
model.add(Dense(2,activation="softmax"))#2 represent output layer neurons
model.summary()
In [0]:
model.compile(loss='categorical_crossentropy', optimizer='adam', metrics=['accuracy'])
In [23]:
model.fit(x_train,y_train,batch_size=128,epochs=20,verbose=1)
Epoch 1/20 9000/9000 [==============================] - 489s 54ms/step - loss: 0.6938 - acc: 0.5404 Epoch 2/20 9000/9000 [==============================] - 516s 57ms/step - loss: 0.4259 - acc: 0.8067 Epoch 3/20 9000/9000 [==============================] - 502s 56ms/step - loss: 0.1767 - acc: 0.9444 Epoch 4/20 9000/9000 [==============================] - 518s 58ms/step - loss: 0.1563 - acc: 0.9516 Epoch 5/20 9000/9000 [==============================] - 484s 54ms/step - loss: 0.1415 - acc: 0.9560 Epoch 6/20 9000/9000 [==============================] - 507s 56ms/step - loss: 0.1347 - acc: 0.9564 Epoch 7/20 9000/9000 [==============================] - 480s 53ms/step - loss: 0.1302 - acc: 0.9587 Epoch 8/20 9000/9000 [==============================] - 478s 53ms/step - loss: 0.1220 - acc: 0.9597 Epoch 9/20 9000/9000 [==============================] - 499s 55ms/step - loss: 0.1117 - acc: 0.9618 Epoch 10/20 9000/9000 [==============================] - 531s 59ms/step - loss: 0.1058 - acc: 0.9630 Epoch 11/20 9000/9000 [==============================] - 489s 54ms/step - loss: 0.1020 - acc: 0.9624 Epoch 12/20 9000/9000 [==============================] - 481s 53ms/step - loss: 0.0955 - acc: 0.9662 Epoch 13/20 9000/9000 [==============================] - 479s 53ms/step - loss: 0.0956 - acc: 0.9672 Epoch 14/20 9000/9000 [==============================] - 504s 56ms/step - loss: 0.0908 - acc: 0.9664 Epoch 15/20 9000/9000 [==============================] - 514s 57ms/step - loss: 0.0805 - acc: 0.9712 Epoch 16/20 9000/9000 [==============================] - 476s 53ms/step - loss: 0.0755 - acc: 0.9714 Epoch 17/20 9000/9000 [==============================] - 478s 53ms/step - loss: 0.0697 - acc: 0.9734 Epoch 18/20 9000/9000 [==============================] - 492s 55ms/step - loss: 0.0707 - acc: 0.9744 Epoch 19/20 9000/9000 [==============================] - 527s 59ms/step - loss: 0.0656 - acc: 0.9757 Epoch 20/20 9000/9000 [==============================] - 531s 59ms/step - loss: 0.0635 - acc: 0.9774
Out[23]:
<keras.callbacks.History at 0x7f7ae659d898>
In [26]:
accuracy = model.evaluate(x_test, y_test, verbose=1)
print('\n', 'Test_Accuracy:-', accuracy[1])
1000/1000 [==============================] - 17s 17ms/step Test_Accuracy:- 0.946
In [0]:
from keras.models import load_model
model.save('cells.h4')
In [0]:
def test_model(path):
image=cv2.imread(path)
cv2_imshow(image)
image_from_array = Image.fromarray(image, 'RGB')
size_image = image_from_array.resize((224, 224))
imgar=np.array(size_image)/255
narray=[]
narray.append(imgar)
narray=np.array(narray)
model=load_model("cells.h4")
score=model.predict(narray,verbose=1)
print(score)
val=np.argmax(score)
if val==0:
print("Malaria detected")
else:
print("Safe")
In [50]:
test_model("cell_images/Parasitized/C101P62ThinF_IMG_20150918_151006_cell_80.png")
1/1 [==============================] - 1s 697ms/step [[1.0000000e+00 5.3829616e-08]] Malaria detected